Ashkenazim PGP Son Reference Standard

Format
FFPE

Description
Horizon has harnessed its’ proprietary FFPE processing capabilities to generate ‘Well Characterized Genome’ (WCG) FFPE samples, in collaboration with the Genome in a Bottle Consortium (GIAB). These standards are ideal for NGS workflows, especially the validation and development of whole-genome sequencing protocols. With this product you are able to: • Evaluate workflow integrity from pre-analytical DNA extraction to post-analytical bioinformatics • Analyze the performance of your pipeline by comparing to freely available datasets through the Personal Genome Project (PGP) • Optimize and validate your whole genome NGS pipeline with well-characterized standards
Catalog ID
Qty
Unit Price
GM24385
$315.00
Bulk order discount

Availability: In stock

Dispatched within 24 hours

Total:
OR
Technical Information
Next generation sequencing (NGS) platforms give researchers much greater power when profiling both somatic and germline mutations. However, the use of NGS presents challenges surrounding sample variability, platform bias, and potential failure to detect mutations of interest. Horizon has harnessed its’ proprietary FFPE processing capabilities to generate ‘Well Characterized Genome’ (WCG) FFPE samples, in collaboration with the Genome in a Bottle Consortium (GIAB). The GIAB is a consortium initiated by the National Institute of Standards and Technology (NIST) to develop the reference materials, reference methods, and reference data needed to support confidence in human whole genome variant calls. Horizon shares the Consortium’s goals of translating NGS sequencing to clinical applications through a community standards development effort. Horizons’ method of mild fixation and homogenous paraffin embedding generates highly-reproducible and consistent FFPE curls. With any commercially available FFPE extraction protocol, our standards yield high molecular weight DNA. The GIAB standards include the Personal Genome Project participants: GIAB Ashkenazim Trio (Mother, GM24143; Father, GM24149; Son, GM24385) and Asian Son (GM24631).

The GIAB FFPE Reference Standards may be utilised as a renewable standard to maintain assay consistency and drive confident interpretation of multiplex data. Due to the highly-characterized nature of these Reference Standards (with Illumina, Ion Torrent, and PacBio sequencing), these samples are ideal as controls for the validation and development of whole-genome sequencing protocols.

Technical Data

Genes Covered
Full Genome
Fixation Method
10% Formalin
Section Size
15µm or 20µm
Cell Density
3 x 108 cells per block. Approx. 3.5 x 105 cells per section
Expected DNA Yield
≥ 400 ng using Promega Maxwell LEV Plus Extraction kit

Product Information

Unit Size
10 FFPE Sections
Extractable DNA
≥ 400 ng per section using Promega Maxwell LEV Plus FFPE DNA Extraction kit
Intended Use
For routine performance monitoring (Research Use Only)

General Information

Allelic Frequency
No
Storage
4˚C
Expiry
36 months from the date of manufacture
Cell Line Background

Available here

Quality Control

Genotype
Sanger sequencing of locus specific PCR
Quality
Agarose gel electrophoresis, Quantitatitive PCR of GAPDH locus
Quantification
Quantifluor™
Protocols & Documents

Please browse our collection of downloads below.

If you need any support, advice or additional documentation then don't hesitate to contact us here.

Certificate of Analysis

Batch ID: 17399
PDF Download
Batch ID: 17400
PDF Download
Batch ID: 21290
PDF Download
Batch ID: 23569
PDF Download

Documents & Related Literature

Product Specification
PDF Download
Safety Data Sheet
PDF Download
Order & Delivery Information

Please see our terms and conditions of ordering.

If you need any support, advice or additional documentation then don't hesitate to contact us here.

Order Information

We accept orders using the following methods:

Online: 

Our online catalog and ordering system can be used to search our full menu of available HDx™ Reference Standards. Select your desired reference standards and add them to the shopping basket. Your order can be submitted instantly using credit card, telephone ordering or a purchase order number as the preferred payment method.

Offline:

If you prefer to send us orders outside our online ordering system, please see the Contact Us page for telephone, fax, and email details in order to place an order.  We recommend that you use our online system to identify the products you require and their respective “HD” product codes. To order offline we will require the following information:

  • Product code(s) of the item(s) you wish to order (e.g. "HD123")
  • Your name, email address, title and organization
  • Shipping address and billing address with contact names
  • Purchase Order number if you have one
  • Telephone number
  • VAT Number (European Countries only)

Shipping Information

We aim to ship your order direct within 5 business days of receipt of your order and we will notify you of your expected delivery date. We ship direct to the following territories:

TerritoryPrice (Room Temperature)Price (4°C)Service

US & Canada

$25.00

$45.00

FEDEX International Priority

EU Countries
(Excluding Italy)

€20.00

€36.00

FEDEX International Priority

UK

£18.00

£32.40

Royal Mail Recorded Signed For™

Rest of the World
(Excluding Japan, Israel, Hong Kong) 

 

$25.00 - $80.00

 

$45.00 - $120.00

 

FEDEX International Priority

 

We have selected Room Temperature as the most appropriate shipping condition to ensure the stability of our HDx DNA and FFPE Reference Standards and 4°C for our HDx FISH Reference Standards during transit.

It is possible to use your own FEDEX account for shipment of goods and we will apply a small fee ($5.00 / £5.00 / €5.00) to cover packaging costs for Room Temperature Shipments and ($25.00 / €20.00 / £18.00) for Dry Ice Shipments. 

If you’re having trouble ordering or finding what you’re looking for, or if you require something we don’t yet offer, please see below for more information: 

Contact Us Terms of Ordering

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